Expand MCP documentation with mode explanations and concrete examples

- Rewrite HOW-TO-USE.md MCP section with a mode matrix (stdio/http x
  manual/docker), four worked examples (filesystem, GitHub, custom HTTP,
  database), and detailed explanations of networking, auto-pull, and
  config injection
- Update README.md MCP architecture section with a mode table and
  key behaviors including auto-pull and Docker DNS details

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

.gitea/workflows/build-app.yml

@@ -10,6 +10,7 @@ on:
     branches: [main]
     paths:
       - "app/**"
+      - ".gitea/workflows/build-app.yml"
   workflow_dispatch:
 
 env:

.gitea/workflows/build.yml

@@ -5,10 +5,12 @@ on:
     branches: [main]
     paths:
       - "container/**"
+      - ".gitea/workflows/build.yml"
   pull_request:
     branches: [main]
     paths:
       - "container/**"
+      - ".gitea/workflows/build.yml"
 
 env:
   REGISTRY: repo.anhonesthost.net

HOW-TO-USE.md

@@ -65,11 +65,11 @@ Switch to the **Projects** tab in the sidebar and click the **+** button.
 
 ### 3. Start the Container
 
-Select your project in the sidebar and click **Start**. The status dot changes from gray (stopped) to orange (starting) to green (running).
+Select your project in the sidebar and click **Start**. A progress modal appears showing real-time status as the container starts. The status dot changes from gray (stopped) to orange (starting) to green (running). The modal auto-closes on success.
 
 ### 4. Open a Terminal
 
-Click the **Terminal** button (highlighted in accent color) to open an interactive terminal session. A new tab appears in the top bar and an xterm.js terminal loads in the main area.
+Click the **Terminal** button to open an interactive terminal session. A new tab appears in the top bar and an xterm.js terminal loads in the main area.
 
 Claude Code launches automatically with `--dangerously-skip-permissions` inside the sandboxed container.
 
@@ -99,16 +99,16 @@ Claude Code launches automatically with `--dangerously-skip-permissions` inside
 │  Sidebar   │                                        │
 │            │          Terminal View                  │
 │  Projects  │         (xterm.js)                     │
+│  MCP       │                                        │
 │  Settings  │                                        │
-│            │                                        │
 ├────────────┴────────────────────────────────────────┤
 │  StatusBar   X projects · X running · X terminals   │
 └─────────────────────────────────────────────────────┘
 ```
 
-- **TopBar** — Terminal tabs for switching between sessions. Status dots on the right show Docker connection (green = connected) and image availability (green = ready).
+- **TopBar** — Terminal tabs for switching between sessions. Bash shell tabs show a "(bash)" suffix. Status dots on the right show Docker connection (green = connected) and image availability (green = ready).
-- **Sidebar** — Toggle between the **Projects** list and **Settings** panel.
+- **Sidebar** — Toggle between the **Projects** list, **MCP** server configuration, and **Settings** panel.
-- **Terminal View** — Interactive terminal powered by xterm.js with WebGL rendering.
+- **Terminal View** — Interactive terminal powered by xterm.js with WebGL rendering. Includes a **Jump to Current** button that appears when you scroll up, so you can quickly return to the latest output.
 - **StatusBar** — Counts of total projects, running containers, and open terminal sessions.
 
 ---
@@ -134,11 +134,17 @@ Select a project in the sidebar to see its action buttons:
 |--------|---------------|--------------|
 | **Start** | Stopped | Creates (if needed) and starts the container |
 | **Stop** | Running | Stops the container but preserves its state |
-| **Terminal** | Running | Opens a new terminal session in this container |
+| **Terminal** | Running | Opens a new Claude Code terminal session |
+| **Shell** | Running | Opens a bash login shell in the container (no Claude Code) |
+| **Files** | Running | Opens the file manager to browse, download, and upload files |
 | **Reset** | Stopped | Destroys and recreates the container from scratch |
 | **Config** | Always | Toggles the configuration panel |
 | **Remove** | Stopped | Deletes the project and its container (with confirmation) |
 
+### Renaming a Project
+
+Double-click the project name in the sidebar to rename it inline. Press **Enter** to confirm or **Escape** to cancel.
+
 ### Container Lifecycle
 
 Containers use a **stop/start** model. When you stop a container, everything inside it is preserved — installed packages, modified files, downloaded tools. Starting it again resumes where you left off.
@@ -147,6 +153,10 @@ Containers use a **stop/start** model. When you stop a container, everything ins
 
 Only **Remove** deletes everything, including the config volume and any stored credentials.
 
+### Container Progress Feedback
+
+When starting, stopping, or resetting a container, a progress modal shows real-time status messages (e.g., "Setting up MCP network...", "Starting MCP containers...", "Creating container..."). If an error occurs, the modal displays the error with a **Close** button. A **Force Stop** option is available if the operation stalls. The modal auto-closes on success.
+
 ---
 
 ## Project Configuration
@@ -177,6 +187,19 @@ When enabled, the host Docker socket is mounted into the container so Claude Cod
 
 > Toggling this requires stopping and restarting the container to take effect.
 
+### Mission Control
+
+Toggle **Mission Control** to integrate [Flight Control](https://github.com/msieurthenardier/mission-control) — an AI-first development methodology — into the project. When enabled:
+
+- The Flight Control repository is automatically cloned into the container
+- Flight Control skills are installed to Claude Code's skill directory (`~/.claude/skills/`)
+- Project instructions are appended with Flight Control workflow guidance
+- The repository is symlinked at `/workspace/mission-control`
+
+Available skills include `/mission`, `/flight`, `/leg`, `/agentic-workflow`, `/flight-debrief`, `/mission-debrief`, `/daily-briefing`, and `/init-project`.
+
+> This setting can only be changed when the container is stopped. Toggling it triggers a container recreation on the next start.
+
 ### Environment Variables
 
 Click **Edit** to open the environment variables modal. Add key-value pairs that will be injected into the container. Per-project variables override global variables with the same key.
@@ -188,8 +211,8 @@ Click **Edit** to open the environment variables modal. Add key-value pairs that
 Click **Edit** to map host ports to container ports. This is useful when Claude Code starts a web server or other service inside the container and you want to access it from your host browser.
 
 Each mapping specifies:
-- **Host Port** — The port on your machine (1–65535)
+- **Host Port** — The port on your machine (1-65535)
-- **Container Port** — The port inside the container (1–65535)
+- **Container Port** — The port inside the container (1-65535)
 - **Protocol** — TCP (default) or UDP
 
 ### Claude Instructions
@@ -198,6 +221,128 @@ Click **Edit** to write per-project instructions for Claude Code. These are writ
 
 ---
 
+## MCP Servers (Beta)
+
+Triple-C supports [Model Context Protocol (MCP)](https://modelcontextprotocol.io/) servers, which extend Claude Code with access to external tools and data sources. MCP servers are configured in a **global library** and **enabled per-project**.
+
+### How It Works
+
+There are two dimensions to MCP server configuration:
+
+| | **Manual** (no Docker image) | **Docker** (Docker image specified) |
+|---|---|---|
+| **Stdio** | Command runs inside the project container | Command runs in a separate MCP container via `docker exec` |
+| **HTTP** | Connects to a URL you provide | Runs in a separate container, reached by hostname on a shared Docker network |
+
+**Docker images are pulled automatically** if not already present when the project starts.
+
+### Accessing MCP Configuration
+
+Click the **MCP** tab in the sidebar to open the MCP server library. This is where you define all available MCP servers.
+
+### Adding an MCP Server
+
+1. Type a name in the input field and click **Add**.
+2. Expand the server card and configure it.
+
+The key decision is whether to set a **Docker Image**:
+- **With Docker image** — The MCP server runs in its own isolated container. Best for servers that need specific dependencies or system-level packages.
+- **Without Docker image** (manual) — The command runs directly inside your project container. Best for lightweight npx-based servers that just need Node.js.
+
+Then choose the **Transport Type**:
+- **Stdio** — The MCP server communicates over stdin/stdout. This is the most common type.
+- **HTTP** — The MCP server exposes an HTTP endpoint (streamable HTTP transport).
+
+### Configuration Examples
+
+#### Example 1: Filesystem Server (Stdio, Manual)
+
+A simple npx-based server that runs inside the project container. No Docker image needed since Node.js is already installed.
+
+| Field | Value |
+|-------|-------|
+| **Docker Image** | *(empty)* |
+| **Transport** | Stdio |
+| **Command** | `npx` |
+| **Arguments** | `-y @modelcontextprotocol/server-filesystem /workspace` |
+
+This gives Claude Code access to browse and read files via MCP. The command runs directly inside the project container using the pre-installed Node.js.
+
+#### Example 2: GitHub Server (Stdio, Manual)
+
+Another npx-based server, with an environment variable for authentication.
+
+| Field | Value |
+|-------|-------|
+| **Docker Image** | *(empty)* |
+| **Transport** | Stdio |
+| **Command** | `npx` |
+| **Arguments** | `-y @modelcontextprotocol/server-github` |
+| **Environment Variables** | `GITHUB_PERSONAL_ACCESS_TOKEN` = `ghp_your_token` |
+
+#### Example 3: Custom MCP Server (HTTP, Docker)
+
+An MCP server packaged as a Docker image that exposes an HTTP endpoint.
+
+| Field | Value |
+|-------|-------|
+| **Docker Image** | `myregistry/my-mcp-server:latest` |
+| **Transport** | HTTP |
+| **Container Port** | `8080` |
+| **Environment Variables** | `API_KEY` = `your_key` |
+
+Triple-C will:
+1. Pull the image automatically if not present
+2. Start the container on the project's bridge network
+3. Configure Claude Code to reach it at `http://triple-c-mcp-{id}:8080/mcp`
+
+The hostname is the MCP container's name on the Docker network — **not** `localhost`.
+
+#### Example 4: Database Server (Stdio, Docker)
+
+An MCP server that needs its own runtime environment, communicating over stdio.
+
+| Field | Value |
+|-------|-------|
+| **Docker Image** | `mcp/postgres-server:latest` |
+| **Transport** | Stdio |
+| **Command** | `node` |
+| **Arguments** | `dist/index.js` |
+| **Environment Variables** | `DATABASE_URL` = `postgresql://user:pass@host:5432/db` |
+
+Triple-C will:
+1. Pull the image and start it on the project network
+2. Configure Claude Code to communicate via `docker exec -i triple-c-mcp-{id} node dist/index.js`
+3. Automatically enable Docker socket access on the project container (required for `docker exec`)
+
+### Enabling MCP Servers Per-Project
+
+In a project's configuration panel (click **Config**), the **MCP Servers** section shows checkboxes for all globally defined servers. Toggle each server on or off for that project. Changes take effect on the next container start.
+
+### How Docker-Based MCP Works
+
+When a project with Docker-based MCP servers starts:
+
+1. Missing Docker images are **automatically pulled** (progress shown in the progress modal)
+2. A dedicated **bridge network** is created for the project (`triple-c-net-{projectId}`)
+3. Each enabled Docker MCP server gets its own container on that network
+4. The main project container is connected to the same network
+5. MCP server configuration is written to `~/.claude.json` inside the container
+
+**Networking**: Docker-based MCP containers are reached by their container name as a hostname (e.g., `triple-c-mcp-{serverId}`), not by `localhost`. Docker DNS resolves these names automatically on the shared bridge network.
+
+**Stdio + Docker**: The project container uses `docker exec` to communicate with the MCP container over stdin/stdout. This automatically enables Docker socket access on the project container.
+
+**HTTP + Docker**: The project container connects to the MCP container's HTTP endpoint using the container hostname and port (e.g., `http://triple-c-mcp-{serverId}:3000/mcp`).
+
+**Manual (no Docker image)**: Stdio commands run directly inside the project container. HTTP URLs connect to wherever you point them (could be an external service or something running on the host).
+
+### Configuration Change Detection
+
+MCP server configuration is tracked via SHA-256 fingerprints stored as Docker labels. If you add, remove, or modify MCP servers for a project, the container is automatically recreated on the next start to apply the new configuration. The container filesystem is snapshotted first, so installed packages are preserved.
+
+---
+
 ## AWS Bedrock Configuration
 
 To use Claude via AWS Bedrock instead of Anthropic's API, switch the auth mode to **Bedrock** on the project card.
@@ -264,7 +409,11 @@ When an update is available, a pulsing **Update** button appears in the top bar.
 
 ### Multiple Sessions
 
-You can open multiple terminal sessions (even for the same project). Each session gets its own tab in the top bar. Click a tab to switch, or click the **x** on a tab to close it.
+You can open multiple terminal sessions (even for the same project). Each session gets its own tab in the top bar. Click a tab to switch, or click the **x** on a tab to close it. Tabs show the project name, with a "(bash)" suffix for shell sessions.
+
+### Bash Shell Sessions
+
+In addition to Claude Code terminals, you can open a plain **bash login shell** in any running container by clicking the **Shell** button. This is useful for manual inspection, package installation, debugging, or running commands that don't need Claude Code.
 
 ### URL Detection
 
@@ -272,9 +421,28 @@ When Claude Code prints a long URL (e.g., during `claude login`), Triple-C detec
 
 Shorter URLs in terminal output are also clickable directly.
 
+### Clipboard Support (OSC 52)
+
+Programs inside the container can copy text to your host clipboard. When a container program uses `xclip`, `xsel`, or `pbcopy`, the text is transparently forwarded to your host clipboard via OSC 52 escape sequences. No additional configuration is required — this works out of the box.
+
 ### Image Paste
 
-You can paste images from your clipboard into the terminal (Ctrl+V / Cmd+V). The image is uploaded to the container and the file path is injected into the terminal input so Claude Code can reference it.
+You can paste images from your clipboard into the terminal (Ctrl+V / Cmd+V). The image is uploaded to the container as `/tmp/clipboard_<timestamp>.png` and the file path is injected into the terminal input so Claude Code can reference it. A toast notification confirms the upload.
+
+### Jump to Current
+
+When you scroll up in the terminal to review previous output, a **Jump to Current** button appears in the bottom-right corner. Click it to scroll back to the latest output.
+
+### File Manager
+
+Click the **Files** button on a running project to open the file manager modal. You can:
+
+- **Browse** the container filesystem starting from `/workspace`, with breadcrumb navigation
+- **Download** any file to your host machine via the download button on each file entry
+- **Upload** files from your host into the current container directory
+- **Refresh** the directory listing at any time
+
+The file manager shows file names, sizes, and modification dates.
 
 ### Terminal Rendering
 
@@ -356,6 +524,8 @@ The sandbox container (Ubuntu 24.04) comes pre-installed with:
 | build-essential | — | C/C++ compiler toolchain |
 | openssh-client | — | SSH for git and remote access |
 
+The container also includes **clipboard shims** (`xclip`, `xsel`, `pbcopy`) that forward copy operations to the host via OSC 52, and an **audio shim** (`rec`, `arecord`) for future voice mode support.
+
 You can install additional tools at runtime with `sudo apt install`, `pip install`, `npm install -g`, etc. Installed packages persist across container stops (but not across resets).
 
 ---
@@ -378,7 +548,7 @@ You can install additional tools at runtime with `sudo apt install`, `pip instal
 
 - Check that the Docker image is "Ready" in Settings.
 - Verify that the mounted folder paths exist on your host.
-- Look at the error message displayed in red below the project card.
+- Look at the error message displayed in the progress modal.
 
 ### OAuth Login URL Not Opening
 
@@ -394,4 +564,10 @@ You can install additional tools at runtime with `sudo apt install`, `pip instal
 ### Settings Won't Save
 
 - Most project settings can only be changed when the container is **stopped**. Stop the container first, make your changes, then start it again.
-- Some changes (like toggling Docker access or changing mounted folders) trigger an automatic container recreation on the next start.
+- Some changes (like toggling Docker access, Mission Control, or changing mounted folders) trigger an automatic container recreation on the next start.
+
+### MCP Containers Not Starting
+
+- Ensure the Docker image for the MCP server exists (pull it first if needed).
+- Check that Docker socket access is available (stdio + Docker MCP servers auto-enable this).
+- Try resetting the project container to force a clean recreation.

README.md

@@ -27,10 +27,10 @@ Triple-C is a cross-platform desktop application that sandboxes Claude Code insi
 ### Container Lifecycle
 
 1. **Create**: New container created with bind mounts, env vars, and labels
-2. **Start**: Container started, entrypoint remaps UID/GID, sets up SSH, configures Docker group
+2. **Start**: Container started, entrypoint remaps UID/GID, sets up SSH, configures Docker group, sets up MCP servers
-3. **Terminal**: `docker exec` launches Claude Code with a PTY
+3. **Terminal**: `docker exec` launches Claude Code (or bash shell) with a PTY
-4. **Stop**: Container halted (filesystem persists in named volume)
+4. **Stop**: Container halted (filesystem persists in named volume); MCP containers stopped
-5. **Restart**: Existing container restarted; recreated if settings changed (e.g., Docker access toggled)
+5. **Restart**: Existing container restarted; recreated if settings changed (detected via SHA-256 fingerprint)
 6. **Reset**: Container removed and recreated from scratch (named volume preserved)
 
 ### Mounts
@@ -41,14 +41,14 @@ Triple-C is a cross-platform desktop application that sandboxes Claude Code insi
 | `/home/claude/.claude` | `triple-c-claude-config-{projectId}` | Named Volume | Persists across container recreation |
 | `/tmp/.host-ssh` | SSH key directory | Bind | Read-only; entrypoint copies to `~/.ssh` |
 | `/home/claude/.aws` | AWS config directory | Bind | Read-only; for Bedrock auth |
-| `/var/run/docker.sock` | Host Docker socket | Bind | Only if "Allow container spawning" is ON |
+| `/var/run/docker.sock` | Host Docker socket | Bind | If "Allow container spawning" is ON, or auto-enabled by stdio+Docker MCP servers |
 
 ### Authentication Modes
 
 Each project can independently use one of:
 
 - **Anthropic** (OAuth): User runs `claude login` inside the terminal on first use. Token persisted in the config volume across restarts and resets.
-- **AWS Bedrock**: Per-project AWS credentials (static keys, profile, or bearer token).
+- **AWS Bedrock**: Per-project AWS credentials (static keys, profile, or bearer token). SSO sessions are validated before launching Claude for Profile auth.
 
 ### Container Spawning (Sibling Containers)
 
@@ -56,6 +56,31 @@ When "Allow container spawning" is enabled per-project, the host Docker socket i
 
 If the Docker access setting is toggled after a container already exists, the container is automatically recreated on next start to apply the mount change. The named config volume (keyed by project ID) is preserved across recreation.
 
+### MCP Server Architecture
+
+Triple-C supports [Model Context Protocol (MCP)](https://modelcontextprotocol.io/) servers as a Beta feature. MCP servers extend Claude Code with external tools and data sources.
+
+**Modes**: Each MCP server operates in one of four modes based on transport type and whether a Docker image is specified:
+
+| Mode | Where It Runs | How It Communicates |
+|------|--------------|---------------------|
+| Stdio + Manual | Inside the project container | Direct stdin/stdout (e.g., `npx -y @mcp/server`) |
+| Stdio + Docker | Separate MCP container | `docker exec -i <mcp-container> <command>` from the project container |
+| HTTP + Manual | External / user-provided | Connects to the URL you specify |
+| HTTP + Docker | Separate MCP container | `http://<mcp-container>:<port>/mcp` via Docker DNS on a shared bridge network |
+
+**Key behaviors**:
+- **Global library**: MCP servers are defined globally in the MCP sidebar tab and stored in `mcp_servers.json`
+- **Per-project toggles**: Each project enables/disables individual servers via checkboxes
+- **Auto-pull**: Docker images for MCP servers are pulled automatically if not present when the project starts
+- **Docker networking**: Docker-based MCP containers run on a per-project bridge network (`triple-c-net-{projectId}`), reachable by container name — not localhost
+- **Auto-detection**: Config changes are detected via SHA-256 fingerprints and trigger automatic container recreation
+- **Config injection**: MCP server configuration is written to `~/.claude.json` inside the container via the `MCP_SERVERS_JSON` environment variable, merged by the entrypoint using `jq`
+
+### Mission Control Integration
+
+Optional per-project integration with [Flight Control](https://github.com/msieurthenardier/mission-control) — an AI-first development methodology. When enabled, the repo is cloned into the container, skills are installed, and workflow instructions are injected into CLAUDE.md.
+
 ### Docker Socket Path
 
 The socket path is OS-aware:
@@ -75,17 +100,32 @@ Users can override this in Settings via the global `docker_socket_path` option.
 | `app/src/components/layout/StatusBar.tsx` | Running project/terminal counts |
 | `app/src/components/projects/ProjectCard.tsx` | Project config, auth mode, action buttons |
 | `app/src/components/projects/ProjectList.tsx` | Project list in sidebar |
-| `app/src/components/settings/SettingsPanel.tsx` | API key, Docker, AWS settings |
+| `app/src/components/projects/FileManagerModal.tsx` | File browser modal (browse, download, upload) |
-| `app/src/components/terminal/TerminalView.tsx` | xterm.js terminal with WebGL, URL detection |
+| `app/src/components/projects/ContainerProgressModal.tsx` | Real-time container operation progress |
-| `app/src/components/terminal/TerminalTabs.tsx` | Tab bar for multiple terminal sessions |
+| `app/src/components/mcp/McpPanel.tsx` | MCP server library (global configuration) |
-| `app/src-tauri/src/docker/container.rs` | Container creation, mounts, env vars, inspection |
+| `app/src/components/mcp/McpServerCard.tsx` | Individual MCP server configuration card |
-| `app/src-tauri/src/docker/exec.rs` | PTY exec sessions for terminal interaction |
+| `app/src/components/settings/SettingsPanel.tsx` | Docker, AWS, timezone, and global settings |
+| `app/src/components/terminal/TerminalView.tsx` | xterm.js terminal with WebGL, URL detection, OSC 52 clipboard, image paste |
+| `app/src/components/terminal/TerminalTabs.tsx` | Tab bar for multiple terminal sessions (claude + bash) |
+| `app/src/hooks/useTerminal.ts` | Terminal session management (claude and bash modes) |
+| `app/src/hooks/useFileManager.ts` | File manager operations (list, download, upload) |
+| `app/src/hooks/useMcpServers.ts` | MCP server CRUD operations |
+| `app/src/hooks/useVoice.ts` | Voice mode audio capture (currently hidden) |
+| `app/src-tauri/src/docker/container.rs` | Container creation, mounts, env vars, MCP injection, fingerprinting |
+| `app/src-tauri/src/docker/exec.rs` | PTY exec sessions, file upload/download via tar |
 | `app/src-tauri/src/docker/image.rs` | Image building/pulling |
+| `app/src-tauri/src/docker/network.rs` | Per-project bridge networks for MCP containers |
 | `app/src-tauri/src/commands/project_commands.rs` | Start/stop/rebuild Tauri command handlers |
-| `app/src-tauri/src/models/project.rs` | Project struct (auth mode, Docker access, etc.) |
+| `app/src-tauri/src/commands/file_commands.rs` | File manager Tauri commands (list, download, upload) |
-| `app/src-tauri/src/models/app_settings.rs` | Global settings (image source, Docker socket, AWS) |
+| `app/src-tauri/src/commands/mcp_commands.rs` | MCP server CRUD Tauri commands |
-| `container/Dockerfile` | Ubuntu 24.04 sandbox image with Claude Code + dev tools |
+| `app/src-tauri/src/models/project.rs` | Project struct (auth mode, Docker access, MCP servers, Mission Control) |
-| `container/entrypoint.sh` | UID/GID remap, SSH setup, Docker group config |
+| `app/src-tauri/src/models/mcp_server.rs` | MCP server struct (transport, Docker image, env vars) |
+| `app/src-tauri/src/models/app_settings.rs` | Global settings (image source, Docker socket, AWS, microphone) |
+| `app/src-tauri/src/storage/mcp_store.rs` | MCP server persistence (JSON with atomic writes) |
+| `container/Dockerfile` | Ubuntu 24.04 sandbox image with Claude Code + dev tools + clipboard/audio shims |
+| `container/entrypoint.sh` | UID/GID remap, SSH setup, Docker group config, MCP injection, Mission Control setup |
+| `container/osc52-clipboard` | Clipboard shim (xclip/xsel/pbcopy via OSC 52) |
+| `container/audio-shim` | Audio capture shim (rec/arecord via FIFO) for voice mode |
 
 ## CSS / Styling Notes
 
@@ -100,4 +140,6 @@ Users can override this in Settings via the global `docker_socket_path` option.
 
 **Pre-installed tools**: Claude Code, Node.js 22 LTS + pnpm, Python 3.12 + uv + ruff, Rust (stable), Docker CLI, git + gh, AWS CLI v2, ripgrep, openssh-client, build-essential
 
+**Shims**: `xclip`/`xsel`/`pbcopy` (OSC 52 clipboard forwarding), `rec`/`arecord` (audio FIFO for voice mode)
+
 **Default user**: `claude` (UID/GID 1000, remapped by entrypoint to match host)

TECHNICAL.md

@@ -154,13 +154,12 @@ The `.claude` configuration directory uses a **named Docker volume** (`triple-c-
 
 ### Authentication Modes
 
-Each project independently chooses one of three authentication methods:
+Each project independently chooses one of two authentication methods:
 
 | Mode | How It Works | When to Use |
 |------|-------------|-------------|
-| **Login (OAuth)** | User runs `claude login` or `/login` inside the terminal. OAuth URL opens in host browser via the web links addon. Token persists in the `.claude` config volume. | Personal use, interactive sessions |
+| **Anthropic (OAuth)** | User runs `claude login` or `/login` inside the terminal. OAuth URL opens in host browser via URL detection. Token persists in the `.claude` config volume. | Default — personal and team use |
-| **API Key** | Key stored in OS keychain, injected as `ANTHROPIC_API_KEY` env var at container creation. | Automated workflows, team-shared keys |
+| **AWS Bedrock** | Per-project AWS credentials (static keys, profile, or bearer token) injected as env vars. `~/.aws` config optionally bind-mounted read-only. | Enterprise environments using Bedrock |
-| **AWS Bedrock** | Per-project AWS credentials (static, profile, or bearer token) injected as env vars. `~/.aws` config optionally bind-mounted read-only. | Enterprise environments using Bedrock |
 
 ### UID/GID Remapping
 
@@ -213,66 +212,93 @@ The `TerminalView` component works around this with a **URL accumulator**:
 
 ```
 triple-c/
-├── LICENSE                     # MIT
+├── README.md                      # Architecture overview
-├── TECHNICAL.md                # This document
+├── TECHNICAL.md                   # This document
-├── Triple-C.md                 # Project overview
+├── HOW-TO-USE.md                  # User guide
+├── BUILDING.md                    # Build instructions
+├── CLAUDE.md                      # Claude Code instructions
 │
 ├── container/
-│   ├── Dockerfile              # Ubuntu 24.04 + all dev tools + Claude Code
+│   ├── Dockerfile                 # Ubuntu 24.04 + all dev tools + Claude Code
-│   └── entrypoint.sh           # UID/GID remap, SSH setup, git config
+│   ├── entrypoint.sh              # UID/GID remap, SSH setup, git config, MCP injection
+│   ├── osc52-clipboard            # Clipboard shim (xclip/xsel/pbcopy via OSC 52)
+│   ├── audio-shim                 # Audio capture shim (rec/arecord via FIFO)
+│   ├── triple-c-scheduler         # Bash-based cron task system
+│   └── triple-c-task-runner       # Task execution runner for scheduler
 │
-└── app/                        # Tauri v2 desktop application
+├── .gitea/
-    ├── package.json            # React, xterm.js, zustand, tailwindcss
+│   └── workflows/
-    ├── vite.config.ts          # Vite bundler config
+│       ├── build-app.yml          # Build Tauri app (Linux/macOS/Windows)
-    ├── index.html              # HTML entry point
+│       ├── build.yml              # Build container image (multi-arch)
+│       ├── sync-release.yml       # Mirror releases to GitHub
+│       └── backfill-releases.yml  # Bulk copy releases to GitHub
+│
+└── app/                           # Tauri v2 desktop application
+    ├── package.json               # React, xterm.js, zustand, tailwindcss
+    ├── vite.config.ts             # Vite bundler config
+    ├── index.html                 # HTML entry point
     │
-    ├── src/                    # React frontend
+    ├── src/                       # React frontend
-    │   ├── main.tsx            # React DOM root
+    │   ├── main.tsx               # React DOM root
-    │   ├── App.tsx             # Top-level layout
+    │   ├── App.tsx                # Top-level layout
-    │   ├── index.css           # CSS variables, dark theme, scrollbars
+    │   ├── index.css              # CSS variables, dark theme, scrollbars
     │   ├── store/
-    │   │   └── appState.ts     # Zustand store (projects, sessions, UI)
+    │   │   └── appState.ts        # Zustand store (projects, sessions, MCP, UI)
     │   ├── hooks/
-    │   │   ├── useDocker.ts    # Docker status, image build
+    │   │   ├── useDocker.ts       # Docker status, image build/pull
-    │   │   ├── useProjects.ts  # Project CRUD operations
+    │   │   ├── useFileManager.ts  # File manager operations
-    │   │   ├── useSettings.ts  # API key, app settings
+    │   │   ├── useMcpServers.ts   # MCP server CRUD
-    │   │   └── useTerminal.ts  # Terminal I/O, resize, session events
+    │   │   ├── useProjects.ts     # Project CRUD operations
+    │   │   ├── useSettings.ts     # App settings
+    │   │   ├── useTerminal.ts     # Terminal I/O, resize, session events
+    │   │   ├── useUpdates.ts      # App update checking
+    │   │   └── useVoice.ts        # Voice mode audio capture
     │   ├── lib/
-    │   │   ├── types.ts        # TypeScript interfaces matching Rust models
+    │   │   ├── types.ts           # TypeScript interfaces matching Rust models
-    │   │   ├── tauri-commands.ts # Typed invoke() wrappers
+    │   │   ├── tauri-commands.ts  # Typed invoke() wrappers
-    │   │   └── constants.ts    # App-wide constants
+    │   │   └── constants.ts       # App-wide constants
     │   └── components/
-    │       ├── layout/         # Sidebar, TopBar, StatusBar
+    │       ├── layout/            # Sidebar, TopBar, StatusBar
-    │       ├── projects/       # ProjectList, ProjectCard, AddProjectDialog
+    │       ├── mcp/               # McpPanel, McpServerCard
-    │       ├── terminal/       # TerminalView (xterm.js), TerminalTabs
+    │       ├── projects/          # ProjectCard, ProjectList, AddProjectDialog,
-    │       ├── settings/       # ApiKeyInput, DockerSettings, AwsSettings
+    │       │                      # FileManagerModal, ContainerProgressModal, modals
-    │       └── containers/     # SiblingContainers
+    │       ├── settings/          # SettingsPanel, DockerSettings, AwsSettings,
+    │       │                      # UpdateDialog
+    │       └── terminal/          # TerminalView (xterm.js), TerminalTabs, UrlToast
     │
-    └── src-tauri/              # Rust backend
+    └── src-tauri/                 # Rust backend
-        ├── Cargo.toml          # Rust dependencies
+        ├── Cargo.toml             # Rust dependencies
-        ├── tauri.conf.json     # Tauri app configuration
+        ├── tauri.conf.json        # Tauri app configuration
         ├── capabilities/
-        │   └── default.json    # Tauri v2 permission grants
+        │   └── default.json       # Tauri v2 permission grants
         └── src/
-            ├── lib.rs          # App builder, plugin + command registration
+            ├── lib.rs             # App builder, plugin + command registration
-            ├── main.rs         # Entry point
+            ├── main.rs            # Entry point
-            ├── commands/       # Tauri command handlers
+            ├── logging.rs         # Log configuration
-            │   ├── docker_commands.rs
+            ├── commands/          # Tauri command handlers
-            │   ├── project_commands.rs
+            │   ├── docker_commands.rs   # Docker status, image ops
-            │   ├── settings_commands.rs
+            │   ├── file_commands.rs     # File manager (list/download/upload)
-            │   └── terminal_commands.rs
+            │   ├── mcp_commands.rs      # MCP server CRUD
-            ├── docker/         # Docker API layer
+            │   ├── project_commands.rs  # Start/stop/rebuild containers
-            │   ├── client.rs   # bollard singleton connection
+            │   ├── settings_commands.rs # Settings CRUD
-            │   ├── container.rs # Create, start, stop, remove, inspect
+            │   ├── terminal_commands.rs # Terminal I/O, resize
-            │   ├── exec.rs     # PTY exec sessions with bidirectional streaming
+            │   └── update_commands.rs   # App update checking
-            │   ├── image.rs    # Build from embedded Dockerfile, pull from registry
+            ├── docker/            # Docker API layer
-            │   └── sibling.rs  # List non-Triple-C containers
+            │   ├── client.rs      # bollard singleton connection
-            ├── models/         # Data structures
+            │   ├── container.rs   # Create, start, stop, remove, fingerprinting
-            │   ├── project.rs  # Project, AuthMode, BedrockConfig
+            │   ├── exec.rs        # PTY exec sessions with bidirectional streaming
-            │   └── container_config.rs
+            │   ├── image.rs       # Build from Dockerfile, pull from registry
-            └── storage/        # Persistence
+            │   └── network.rs     # Per-project bridge networks for MCP
+            ├── models/            # Data structures
+            │   ├── project.rs     # Project, AuthMode, BedrockConfig
+            │   ├── mcp_server.rs  # MCP server configuration
+            │   ├── app_settings.rs # Global settings (image source, AWS, etc.)
+            │   ├── container_config.rs # Image name resolution
+            │   └── update_info.rs # Update metadata
+            └── storage/           # Persistence
                 ├── projects_store.rs  # JSON file with atomic writes
-                ├── settings_store.rs  # App settings
+                ├── mcp_store.rs       # MCP server persistence
+                ├── settings_store.rs  # App settings (Tauri plugin-store)
                 └── secure.rs          # OS keychain via keyring
 ```
 

app/src-tauri/src/commands/file_commands.rs

@@ -0,0 +1,211 @@
+use bollard::container::{DownloadFromContainerOptions, UploadToContainerOptions};
+use futures_util::StreamExt;
+use serde::Serialize;
+use tauri::State;
+
+use crate::docker::client::get_docker;
+use crate::docker::exec::exec_oneshot;
+use crate::AppState;
+
+#[derive(Debug, Serialize)]
+pub struct FileEntry {
+    pub name: String,
+    pub path: String,
+    pub is_directory: bool,
+    pub size: u64,
+    pub modified: String,
+    pub permissions: String,
+}
+
+#[tauri::command]
+pub async fn list_container_files(
+    project_id: String,
+    path: String,
+    state: State<'_, AppState>,
+) -> Result<Vec<FileEntry>, String> {
+    let project = state
+        .projects_store
+        .get(&project_id)
+        .ok_or_else(|| format!("Project {} not found", project_id))?;
+
+    let container_id = project
+        .container_id
+        .as_ref()
+        .ok_or_else(|| "Container not running".to_string())?;
+
+    let cmd = vec![
+        "find".to_string(),
+        path.clone(),
+        "-mindepth".to_string(),
+        "1".to_string(),
+        "-maxdepth".to_string(),
+        "1".to_string(),
+        "-printf".to_string(),
+        "%f\t%y\t%s\t%T@\t%m\n".to_string(),
+    ];
+
+    let output = exec_oneshot(container_id, cmd).await?;
+
+    let mut entries: Vec<FileEntry> = output
+        .lines()
+        .filter(|line| !line.trim().is_empty())
+        .filter_map(|line| {
+            let parts: Vec<&str> = line.split('\t').collect();
+            if parts.len() < 5 {
+                return None;
+            }
+            let name = parts[0].to_string();
+            let is_directory = parts[1] == "d";
+            let size = parts[2].parse::<u64>().unwrap_or(0);
+            let modified_epoch = parts[3].parse::<f64>().unwrap_or(0.0);
+            let permissions = parts[4].to_string();
+
+            // Convert epoch to ISO-ish string
+            let modified = {
+                let secs = modified_epoch as i64;
+                let dt = chrono::DateTime::from_timestamp(secs, 0)
+                    .unwrap_or_default();
+                dt.format("%Y-%m-%d %H:%M:%S").to_string()
+            };
+
+            let entry_path = if path.ends_with('/') {
+                format!("{}{}", path, name)
+            } else {
+                format!("{}/{}", path, name)
+            };
+
+            Some(FileEntry {
+                name,
+                path: entry_path,
+                is_directory,
+                size,
+                modified,
+                permissions,
+            })
+        })
+        .collect();
+
+    // Sort: directories first, then alphabetical
+    entries.sort_by(|a, b| {
+        b.is_directory
+            .cmp(&a.is_directory)
+            .then_with(|| a.name.to_lowercase().cmp(&b.name.to_lowercase()))
+    });
+
+    Ok(entries)
+}
+
+#[tauri::command]
+pub async fn download_container_file(
+    project_id: String,
+    container_path: String,
+    host_path: String,
+    state: State<'_, AppState>,
+) -> Result<(), String> {
+    let project = state
+        .projects_store
+        .get(&project_id)
+        .ok_or_else(|| format!("Project {} not found", project_id))?;
+
+    let container_id = project
+        .container_id
+        .as_ref()
+        .ok_or_else(|| "Container not running".to_string())?;
+
+    let docker = get_docker()?;
+
+    let mut stream = docker.download_from_container(
+        container_id,
+        Some(DownloadFromContainerOptions {
+            path: container_path.clone(),
+        }),
+    );
+
+    let mut tar_bytes = Vec::new();
+    while let Some(chunk) = stream.next().await {
+        let chunk = chunk.map_err(|e| format!("Failed to download file: {}", e))?;
+        tar_bytes.extend_from_slice(&chunk);
+    }
+
+    // Extract single file from tar archive
+    let mut archive = tar::Archive::new(&tar_bytes[..]);
+    let mut found = false;
+    for entry in archive
+        .entries()
+        .map_err(|e| format!("Failed to read tar entries: {}", e))?
+    {
+        let mut entry = entry.map_err(|e| format!("Failed to read tar entry: {}", e))?;
+        let mut contents = Vec::new();
+        std::io::Read::read_to_end(&mut entry, &mut contents)
+            .map_err(|e| format!("Failed to read file contents: {}", e))?;
+        std::fs::write(&host_path, &contents)
+            .map_err(|e| format!("Failed to write file to host: {}", e))?;
+        found = true;
+        break;
+    }
+
+    if !found {
+        return Err("File not found in tar archive".to_string());
+    }
+
+    Ok(())
+}
+
+#[tauri::command]
+pub async fn upload_file_to_container(
+    project_id: String,
+    host_path: String,
+    container_dir: String,
+    state: State<'_, AppState>,
+) -> Result<(), String> {
+    let project = state
+        .projects_store
+        .get(&project_id)
+        .ok_or_else(|| format!("Project {} not found", project_id))?;
+
+    let container_id = project
+        .container_id
+        .as_ref()
+        .ok_or_else(|| "Container not running".to_string())?;
+
+    let docker = get_docker()?;
+
+    let file_data = std::fs::read(&host_path)
+        .map_err(|e| format!("Failed to read host file: {}", e))?;
+
+    let file_name = std::path::Path::new(&host_path)
+        .file_name()
+        .ok_or_else(|| "Invalid file path".to_string())?
+        .to_string_lossy()
+        .to_string();
+
+    // Build tar archive in memory
+    let mut tar_buf = Vec::new();
+    {
+        let mut builder = tar::Builder::new(&mut tar_buf);
+        let mut header = tar::Header::new_gnu();
+        header.set_size(file_data.len() as u64);
+        header.set_mode(0o644);
+        header.set_cksum();
+        builder
+            .append_data(&mut header, &file_name, &file_data[..])
+            .map_err(|e| format!("Failed to create tar entry: {}", e))?;
+        builder
+            .finish()
+            .map_err(|e| format!("Failed to finalize tar: {}", e))?;
+    }
+
+    docker
+        .upload_to_container(
+            container_id,
+            Some(UploadToContainerOptions {
+                path: container_dir,
+                ..Default::default()
+            }),
+            tar_buf.into(),
+        )
+        .await
+        .map_err(|e| format!("Failed to upload file to container: {}", e))?;
+
+    Ok(())
+}

app/src-tauri/src/commands/mod.rs

@@ -1,4 +1,5 @@
 pub mod docker_commands;
+pub mod file_commands;
 pub mod mcp_commands;
 pub mod project_commands;
 pub mod settings_commands;

app/src-tauri/src/commands/project_commands.rs

@@ -202,6 +202,28 @@ pub async fn start_project_container(
 
         // Set up Docker network and MCP containers if needed
         let network_name = if !docker_mcp.is_empty() {
+            // Pull any missing MCP Docker images before starting containers
+            for server in &docker_mcp {
+                if let Some(ref image) = server.docker_image {
+                    if !docker::image_exists(image).await.unwrap_or(false) {
+                        emit_progress(
+                            &app_handle,
+                            &project_id,
+                            &format!("Pulling MCP image for '{}'...", server.name),
+                        );
+                        let image_clone = image.clone();
+                        let app_clone = app_handle.clone();
+                        let pid_clone = project_id.clone();
+                        let sname = server.name.clone();
+                        docker::pull_image(&image_clone, move |msg| {
+                            emit_progress(&app_clone, &pid_clone, &format!("[{}] {}", sname, msg));
+                        }).await.map_err(|e| {
+                            format!("Failed to pull MCP image '{}' for '{}': {}", image, server.name, e)
+                        })?;
+                    }
+                }
+            }
+
             emit_progress(&app_handle, &project_id, "Setting up MCP network...");
             let net = docker::ensure_project_network(&project.id).await?;
             emit_progress(&app_handle, &project_id, "Starting MCP containers...");
@@ -386,6 +408,46 @@ pub async fn rebuild_project_container(
     start_project_container(project_id, app_handle, state).await
 }
 
+/// Reconcile project statuses against actual Docker container state.
+/// Called by the frontend after Docker is confirmed available. Projects
+/// marked as Running whose containers are no longer running get reset
+/// to Stopped.
+#[tauri::command]
+pub async fn reconcile_project_statuses(
+    state: State<'_, AppState>,
+) -> Result<Vec<Project>, String> {
+    let projects = state.projects_store.list();
+
+    for project in &projects {
+        if project.status != ProjectStatus::Running && project.status != ProjectStatus::Error {
+            continue;
+        }
+
+        let is_running = if let Some(ref container_id) = project.container_id {
+            docker::is_container_running(container_id).await.unwrap_or(false)
+        } else {
+            false
+        };
+
+        if is_running {
+            log::info!(
+                "Project '{}' ({}) container is still running — keeping Running status",
+                project.name,
+                project.id
+            );
+        } else {
+            log::info!(
+                "Project '{}' ({}) container is not running — setting to Stopped",
+                project.name,
+                project.id
+            );
+            let _ = state.projects_store.update_status(&project.id, ProjectStatus::Stopped);
+        }
+    }
+
+    Ok(state.projects_store.list())
+}
+
 fn default_docker_socket() -> String {
     if cfg!(target_os = "windows") {
         "//./pipe/docker_engine".to_string()

app/src-tauri/src/commands/terminal_commands.rs

@@ -73,6 +73,7 @@ exec claude --dangerously-skip-permissions
 pub async fn open_terminal_session(
     project_id: String,
     session_id: String,
+    session_type: Option<String>,
     app_handle: AppHandle,
     state: State<'_, AppState>,
 ) -> Result<(), String> {
@@ -86,7 +87,10 @@ pub async fn open_terminal_session(
         .as_ref()
         .ok_or_else(|| "Container not running".to_string())?;
 
-    let cmd = build_terminal_cmd(&project, &state);
+    let cmd = match session_type.as_deref() {
+        Some("bash") => vec!["bash".to_string(), "-l".to_string()],
+        _ => build_terminal_cmd(&project, &state),
+    };
 
     let output_event = format!("terminal-output-{}", session_id);
     let exit_event = format!("terminal-exit-{}", session_id);

app/src-tauri/src/docker/container.rs

@@ -40,6 +40,54 @@ After tasks run, check notifications with `triple-c-scheduler notifications` and
 ### Timezone
 Scheduled times use the container's configured timezone (check with `date`). If no timezone is configured, UTC is used."#;
 
+const MISSION_CONTROL_GLOBAL_INSTRUCTIONS: &str = r#"## Mission Control
+
+The `/workspace/mission-control/` directory contains **Flight Control** — an AI-first development methodology for structured project management. Use it for all project work.
+
+### How It Works
+
+- **Mission Control is a tool, not a project.** It provides skills and methodology for managing other projects.
+- All Flight Control skills are installed as personal skills in `~/.claude/skills/` and are automatically available as `/slash-commands`
+- The methodology docs and project registry live in `/workspace/mission-control/`
+
+### When to Use
+
+When working on any project that has a `.flightops/` directory, follow the Flight Control methodology:
+1. Read the project's `.flightops/ARTIFACTS.md` to understand artifact storage
+2. Read `.flightops/FLIGHT_OPERATIONS.md` for the implementation workflow
+3. Use Mission Control skills for planning and execution
+
+### Available Skills
+
+| Skill | When to Use |
+|-------|-------------|
+| `/init-project` | Setting up a new project for Flight Control |
+| `/mission` | Defining new work outcomes (days-to-weeks scope) |
+| `/flight` | Creating technical specs from missions (hours-to-days scope) |
+| `/leg` | Generating implementation steps from flights (minutes-to-hours scope) |
+| `/agentic-workflow` | Executing legs with multi-agent workflow (implement, review, commit) |
+| `/flight-debrief` | Post-flight analysis after a flight lands |
+| `/mission-debrief` | Post-mission retrospective after completion |
+| `/daily-briefing` | Cross-project status report |
+
+### Key Rules
+
+- **Planning skills produce artifacts only** — never modify source code directly
+- **Phase gates require human confirmation** — missions before flights, flights before legs
+- **Legs are immutable once in-flight** — create new ones instead of modifying
+- **`/agentic-workflow` orchestrates implementation** — it spawns separate Developer and Reviewer agents
+- **Artifacts live in the target project** — not in mission-control"#;
+
+const MISSION_CONTROL_PROJECT_INSTRUCTIONS: &str = r#"## Flight Operations
+
+This project uses [Flight Control](https://github.com/msieurthenardier/mission-control) for structured development.
+
+**Before any mission/flight/leg work, read these files in order:**
+1. `.flightops/README.md` — What the flightops directory contains
+2. `.flightops/FLIGHT_OPERATIONS.md` — **The workflow you MUST follow**
+3. `.flightops/ARTIFACTS.md` — Where all artifacts are stored
+4. `.flightops/agent-crews/` — Project crew definitions for each phase (read the relevant crew file)"#;
+
 /// Build the full CLAUDE_INSTRUCTIONS value by merging global + project
 /// instructions, appending port mapping docs, and appending scheduler docs.
 /// Used by both create_container() and container_needs_recreation() to ensure
@@ -48,8 +96,13 @@ fn build_claude_instructions(
     global_instructions: Option<&str>,
     project_instructions: Option<&str>,
     port_mappings: &[PortMapping],
+    mission_control_enabled: bool,
 ) -> Option<String> {
-    let mut combined = merge_claude_instructions(global_instructions, project_instructions);
+    let mut combined = merge_claude_instructions(
+        global_instructions,
+        project_instructions,
+        mission_control_enabled,
+    );
 
     if !port_mappings.is_empty() {
         let mut port_lines: Vec<String> = Vec::new();
@@ -116,14 +169,37 @@ fn merge_custom_env_vars(global: &[EnvVar], project: &[EnvVar]) -> Vec<EnvVar> {
 }
 
 /// Merge global and per-project Claude instructions into a single string.
+/// When mission_control_enabled is true, appends Mission Control global
+/// instructions after global and project instructions after project.
 fn merge_claude_instructions(
     global_instructions: Option<&str>,
     project_instructions: Option<&str>,
+    mission_control_enabled: bool,
 ) -> Option<String> {
-    match (global_instructions, project_instructions) {
+    // Build the global portion (user global + optional MC global)
+    let global_part = if mission_control_enabled {
+        match global_instructions {
+            Some(g) => Some(format!("{}\n\n{}", g, MISSION_CONTROL_GLOBAL_INSTRUCTIONS)),
+            None => Some(MISSION_CONTROL_GLOBAL_INSTRUCTIONS.to_string()),
+        }
+    } else {
+        global_instructions.map(|g| g.to_string())
+    };
+
+    // Build the project portion (user project + optional MC project)
+    let project_part = if mission_control_enabled {
+        match project_instructions {
+            Some(p) => Some(format!("{}\n\n{}", p, MISSION_CONTROL_PROJECT_INSTRUCTIONS)),
+            None => Some(MISSION_CONTROL_PROJECT_INSTRUCTIONS.to_string()),
+        }
+    } else {
+        project_instructions.map(|p| p.to_string())
+    };
+
+    match (global_part, project_part) {
         (Some(g), Some(p)) => Some(format!("{}\n\n{}", g, p)),
-        (Some(g), None) => Some(g.to_string()),
+        (Some(g), None) => Some(g),
-        (None, Some(p)) => Some(p.to_string()),
+        (None, Some(p)) => Some(p),
         (None, None) => None,
     }
 }
@@ -426,11 +502,17 @@ pub async fn create_container(
         }
     }
 
+    // Mission Control env var
+    if project.mission_control_enabled {
+        env_vars.push("MISSION_CONTROL_ENABLED=1".to_string());
+    }
+
     // Claude instructions (global + per-project, plus port mapping info + scheduler docs)
     let combined_instructions = build_claude_instructions(
         global_claude_instructions,
         project.claude_instructions.as_deref(),
         &project.port_mappings,
+        project.mission_control_enabled,
     );
 
     if let Some(ref instructions) = combined_instructions {
@@ -567,6 +649,7 @@ pub async fn create_container(
     labels.insert("triple-c.image".to_string(), image_name.to_string());
     labels.insert("triple-c.timezone".to_string(), timezone.unwrap_or("").to_string());
     labels.insert("triple-c.mcp-fingerprint".to_string(), compute_mcp_fingerprint(mcp_servers));
+    labels.insert("triple-c.mission-control".to_string(), project.mission_control_enabled.to_string());
 
     let host_config = HostConfig {
         mounts: Some(mounts),
@@ -885,11 +968,20 @@ pub async fn container_needs_recreation(
         return Ok(true);
     }
 
+    // ── Mission Control ────────────────────────────────────────────────────
+    let expected_mc = project.mission_control_enabled.to_string();
+    let container_mc = get_label("triple-c.mission-control").unwrap_or_else(|| "false".to_string());
+    if container_mc != expected_mc {
+        log::info!("Mission Control mismatch (container={:?}, expected={:?})", container_mc, expected_mc);
+        return Ok(true);
+    }
+
     // ── Claude instructions ───────────────────────────────────────────────
     let expected_instructions = build_claude_instructions(
         global_claude_instructions,
         project.claude_instructions.as_deref(),
         &project.port_mappings,
+        project.mission_control_enabled,
     );
     let container_instructions = get_env("CLAUDE_INSTRUCTIONS");
     if container_instructions.as_deref() != expected_instructions.as_deref() {
@@ -939,6 +1031,16 @@ pub async fn get_container_info(project: &Project) -> Result<Option<ContainerInf
     }
 }
 
+/// Check whether a Docker container is currently running.
+/// Returns false if the container doesn't exist or Docker is unavailable.
+pub async fn is_container_running(container_id: &str) -> Result<bool, String> {
+    let docker = get_docker()?;
+    match docker.inspect_container(container_id, None).await {
+        Ok(info) => Ok(info.state.and_then(|s| s.running).unwrap_or(false)),
+        Err(_) => Ok(false),
+    }
+}
+
 pub async fn list_sibling_containers() -> Result<Vec<ContainerSummary>, String> {
     let docker = get_docker()?;
 

app/src-tauri/src/docker/exec.rs

@@ -277,3 +277,41 @@ impl ExecSessionManager {
         Ok(format!("/tmp/{}", file_name))
     }
 }
+
+/// Run a one-shot (non-interactive) exec command in a container and collect stdout.
+pub async fn exec_oneshot(container_id: &str, cmd: Vec<String>) -> Result<String, String> {
+    let docker = get_docker()?;
+
+    let exec = docker
+        .create_exec(
+            container_id,
+            CreateExecOptions {
+                attach_stdout: Some(true),
+                attach_stderr: Some(true),
+                cmd: Some(cmd),
+                user: Some("claude".to_string()),
+                ..Default::default()
+            },
+        )
+        .await
+        .map_err(|e| format!("Failed to create exec: {}", e))?;
+
+    let result = docker
+        .start_exec(&exec.id, None)
+        .await
+        .map_err(|e| format!("Failed to start exec: {}", e))?;
+
+    match result {
+        StartExecResults::Attached { mut output, .. } => {
+            let mut stdout = String::new();
+            while let Some(msg) = output.next().await {
+                match msg {
+                    Ok(data) => stdout.push_str(&String::from_utf8_lossy(&data.into_bytes())),
+                    Err(e) => return Err(format!("Exec output error: {}", e)),
+                }
+            }
+            Ok(stdout)
+        }
+        StartExecResults::Detached => Err("Exec started in detached mode".to_string()),
+    }
+}

app/src-tauri/src/lib.rs

@@ -88,6 +88,7 @@ pub fn run() {
             commands::project_commands::start_project_container,
             commands::project_commands::stop_project_container,
             commands::project_commands::rebuild_project_container,
+            commands::project_commands::reconcile_project_statuses,
             // Settings
             commands::settings_commands::get_settings,
             commands::settings_commands::update_settings,
@@ -104,6 +105,10 @@ pub fn run() {
             commands::terminal_commands::start_audio_bridge,
             commands::terminal_commands::send_audio_data,
             commands::terminal_commands::stop_audio_bridge,
+            // Files
+            commands::file_commands::list_container_files,
+            commands::file_commands::download_container_file,
+            commands::file_commands::upload_file_to_container,
             // MCP
             commands::mcp_commands::list_mcp_servers,
             commands::mcp_commands::add_mcp_server,

app/src-tauri/src/models/project.rs

@@ -34,8 +34,10 @@ pub struct Project {
     pub auth_mode: AuthMode,
     pub bedrock_config: Option<BedrockConfig>,
     pub allow_docker_access: bool,
+    #[serde(default)]
+    pub mission_control_enabled: bool,
     pub ssh_key_path: Option<String>,
-    #[serde(skip_serializing)]
+    #[serde(skip_serializing, default)]
     pub git_token: Option<String>,
     pub git_user_name: Option<String>,
     pub git_user_email: Option<String>,
@@ -100,14 +102,14 @@ impl Default for BedrockAuthMethod {
 pub struct BedrockConfig {
     pub auth_method: BedrockAuthMethod,
     pub aws_region: String,
-    #[serde(skip_serializing)]
+    #[serde(skip_serializing, default)]
     pub aws_access_key_id: Option<String>,
-    #[serde(skip_serializing)]
+    #[serde(skip_serializing, default)]
     pub aws_secret_access_key: Option<String>,
-    #[serde(skip_serializing)]
+    #[serde(skip_serializing, default)]
     pub aws_session_token: Option<String>,
     pub aws_profile: Option<String>,
-    #[serde(skip_serializing)]
+    #[serde(skip_serializing, default)]
     pub aws_bearer_token: Option<String>,
     pub model_id: Option<String>,
     pub disable_prompt_caching: bool,
@@ -125,6 +127,7 @@ impl Project {
             auth_mode: AuthMode::default(),
             bedrock_config: None,
             allow_docker_access: false,
+            mission_control_enabled: false,
             ssh_key_path: None,
             git_token: None,
             git_user_name: None,

app/src-tauri/src/storage/projects_store.rs

@@ -72,6 +72,8 @@ impl ProjectsStore {
 
         // Reconcile stale transient statuses: on a cold app start no Docker
         // operations can be in flight, so Starting/Stopping are always stale.
+        // Running/Error are left as-is and reconciled against Docker later
+        // via the reconcile_project_statuses command.
         let mut projects = projects;
         let mut needs_save = needs_save;
         for p in projects.iter_mut() {

app/src/App.tsx

@@ -10,6 +10,7 @@ import { useProjects } from "./hooks/useProjects";
 import { useMcpServers } from "./hooks/useMcpServers";
 import { useUpdates } from "./hooks/useUpdates";
 import { useAppState } from "./store/appState";
+import { reconcileProjectStatuses } from "./lib/tauri-commands";
 
 export default function App() {
   const { checkDocker, checkImage, startDockerPolling } = useDocker();
@@ -17,8 +18,8 @@ export default function App() {
   const { refresh } = useProjects();
   const { refresh: refreshMcp } = useMcpServers();
   const { loadVersion, checkForUpdates, startPeriodicCheck } = useUpdates();
-  const { sessions, activeSessionId } = useAppState(
+  const { sessions, activeSessionId, setProjects } = useAppState(
-    useShallow(s => ({ sessions: s.sessions, activeSessionId: s.activeSessionId }))
+    useShallow(s => ({ sessions: s.sessions, activeSessionId: s.activeSessionId, setProjects: s.setProjects }))
   );
 
   // Initialize on mount
@@ -28,6 +29,14 @@ export default function App() {
     checkDocker().then((available) => {
       if (available) {
         checkImage();
+        // Reconcile project statuses against actual Docker container state,
+        // then refresh the project list so the UI reflects reality.
+        reconcileProjectStatuses().then((projects) => {
+          setProjects(projects);
+        }).catch(() => {
+          // If reconciliation fails (e.g. Docker hiccup), just load from store
+          refresh();
+        });
       } else {
         stopPolling = startDockerPolling();
       }

app/src/components/mcp/McpServerCard.tsx

@@ -147,7 +147,7 @@ export default function McpServerCard({ server, onUpdate, onRemove }: Props) {
               className={inputCls}
             />
             <p className="text-xs text-[var(--text-secondary)] mt-0.5 opacity-60">
-              Set a Docker image to run this MCP server as a container. Leave empty for manual mode.
+              Set a Docker image to run this MCP server in its own container. Leave empty to run commands inside the project container. Images are pulled automatically if not present.
             </p>
           </div>
 
@@ -171,6 +171,14 @@ export default function McpServerCard({ server, onUpdate, onRemove }: Props) {
             </div>
           </div>
 
+          {/* Mode description */}
+          <p className="text-xs text-[var(--text-secondary)] opacity-60">
+            {transportType === "stdio" && isDocker && "Runs via docker exec in a separate MCP container."}
+            {transportType === "stdio" && !isDocker && "Runs inside the project container (e.g. npx commands)."}
+            {transportType === "http" && isDocker && "Runs in a separate container, reached by hostname on the project network."}
+            {transportType === "http" && !isDocker && "Connects to an MCP server at the URL you specify."}
+          </p>
+
           {/* Container Port (HTTP+Docker only) */}
           {transportType === "http" && isDocker && (
             <div>
@@ -183,7 +191,7 @@ export default function McpServerCard({ server, onUpdate, onRemove }: Props) {
                 className={inputCls}
               />
               <p className="text-xs text-[var(--text-secondary)] mt-0.5 opacity-60">
-                Port inside the MCP container (default: 3000)
+                Port the MCP server listens on inside its container. The URL is auto-generated as http://&lt;container&gt;:&lt;port&gt;/mcp on the project network.
               </p>
             </div>
           )}

app/src/components/projects/ConfirmRemoveModal.tsx

@@ -0,0 +1,55 @@
+import { useEffect, useRef, useCallback } from "react";
+
+interface Props {
+  projectName: string;
+  onConfirm: () => void;
+  onCancel: () => void;
+}
+
+export default function ConfirmRemoveModal({ projectName, onConfirm, onCancel }: Props) {
+  const overlayRef = useRef<HTMLDivElement>(null);
+
+  useEffect(() => {
+    const handleKeyDown = (e: KeyboardEvent) => {
+      if (e.key === "Escape") onCancel();
+    };
+    document.addEventListener("keydown", handleKeyDown);
+    return () => document.removeEventListener("keydown", handleKeyDown);
+  }, [onCancel]);
+
+  const handleOverlayClick = useCallback(
+    (e: React.MouseEvent<HTMLDivElement>) => {
+      if (e.target === overlayRef.current) onCancel();
+    },
+    [onCancel],
+  );
+
+  return (
+    <div
+      ref={overlayRef}
+      onClick={handleOverlayClick}
+      className="fixed inset-0 bg-black/50 flex items-center justify-center z-50"
+    >
+      <div className="bg-[var(--bg-secondary)] border border-[var(--border-color)] rounded-lg p-6 w-[24rem] shadow-xl">
+        <h2 className="text-lg font-semibold mb-3">Remove Project</h2>
+        <p className="text-sm text-[var(--text-secondary)] mb-5">
+          Are you sure you want to remove <strong className="text-[var(--text-primary)]">{projectName}</strong>? This will delete the container, config volume, and stored credentials.
+        </p>
+        <div className="flex justify-end gap-2">
+          <button
+            onClick={onCancel}
+            className="px-4 py-2 text-sm text-[var(--text-secondary)] hover:text-[var(--text-primary)] transition-colors"
+          >
+            Cancel
+          </button>
+          <button
+            onClick={onConfirm}
+            className="px-4 py-2 text-sm text-white bg-[var(--error)] hover:opacity-80 rounded transition-colors"
+          >
+            Remove
+          </button>
+        </div>
+      </div>
+    </div>
+  );
+}

app/src/components/projects/FileManagerModal.tsx

@@ -0,0 +1,197 @@
+import { useEffect, useRef, useCallback } from "react";
+import { useFileManager } from "../../hooks/useFileManager";
+
+interface Props {
+  projectId: string;
+  projectName: string;
+  onClose: () => void;
+}
+
+function formatSize(bytes: number): string {
+  if (bytes < 1024) return `${bytes} B`;
+  if (bytes < 1024 * 1024) return `${(bytes / 1024).toFixed(1)} KB`;
+  if (bytes < 1024 * 1024 * 1024) return `${(bytes / (1024 * 1024)).toFixed(1)} MB`;
+  return `${(bytes / (1024 * 1024 * 1024)).toFixed(1)} GB`;
+}
+
+export default function FileManagerModal({ projectId, projectName, onClose }: Props) {
+  const {
+    currentPath,
+    entries,
+    loading,
+    error,
+    navigate,
+    goUp,
+    refresh,
+    downloadFile,
+    uploadFile,
+  } = useFileManager(projectId);
+  const overlayRef = useRef<HTMLDivElement>(null);
+
+  // Load initial directory
+  useEffect(() => {
+    navigate("/workspace");
+  }, [navigate]);
+
+  useEffect(() => {
+    const handleKeyDown = (e: KeyboardEvent) => {
+      if (e.key === "Escape") onClose();
+    };
+    document.addEventListener("keydown", handleKeyDown);
+    return () => document.removeEventListener("keydown", handleKeyDown);
+  }, [onClose]);
+
+  const handleOverlayClick = useCallback(
+    (e: React.MouseEvent<HTMLDivElement>) => {
+      if (e.target === overlayRef.current) onClose();
+    },
+    [onClose],
+  );
+
+  // Build breadcrumbs from current path
+  const breadcrumbs = currentPath === "/"
+    ? [{ label: "/", path: "/" }]
+    : currentPath.split("/").reduce<{ label: string; path: string }[]>((acc, part, i) => {
+        if (i === 0) {
+          acc.push({ label: "/", path: "/" });
+        } else if (part) {
+          const parentPath = acc[acc.length - 1].path;
+          const fullPath = parentPath === "/" ? `/${part}` : `${parentPath}/${part}`;
+          acc.push({ label: part, path: fullPath });
+        }
+        return acc;
+      }, []);
+
+  return (
+    <div
+      ref={overlayRef}
+      onClick={handleOverlayClick}
+      className="fixed inset-0 bg-black/50 flex items-center justify-center z-50"
+    >
+      <div className="bg-[var(--bg-secondary)] border border-[var(--border-color)] rounded-lg shadow-xl w-[36rem] max-h-[80vh] flex flex-col">
+        {/* Header */}
+        <div className="flex items-center justify-between px-4 py-3 border-b border-[var(--border-color)]">
+          <h2 className="text-sm font-semibold">Files — {projectName}</h2>
+          <button
+            onClick={onClose}
+            className="text-[var(--text-secondary)] hover:text-[var(--text-primary)] transition-colors"
+          >
+            ×
+          </button>
+        </div>
+
+        {/* Path bar */}
+        <div className="flex items-center gap-1 px-4 py-2 border-b border-[var(--border-color)] text-xs overflow-x-auto flex-shrink-0">
+          {breadcrumbs.map((crumb, i) => (
+            <span key={crumb.path} className="flex items-center gap-1">
+              {i > 0 && <span className="text-[var(--text-secondary)]">/</span>}
+              <button
+                onClick={() => navigate(crumb.path)}
+                className="text-[var(--accent)] hover:text-[var(--accent-hover)] transition-colors whitespace-nowrap"
+              >
+                {crumb.label}
+              </button>
+            </span>
+          ))}
+          <div className="flex-1" />
+          <button
+            onClick={refresh}
+            disabled={loading}
+            className="text-[var(--text-secondary)] hover:text-[var(--text-primary)] transition-colors disabled:opacity-50 px-1"
+            title="Refresh"
+          >
+            ↻
+          </button>
+        </div>
+
+        {/* Content */}
+        <div className="flex-1 overflow-y-auto min-h-0">
+          {error && (
+            <div className="px-4 py-2 text-xs text-[var(--error)]">{error}</div>
+          )}
+
+          {loading && entries.length === 0 ? (
+            <div className="px-4 py-8 text-center text-xs text-[var(--text-secondary)]">
+              Loading...
+            </div>
+          ) : (
+            <table className="w-full text-xs">
+              <tbody>
+                {/* Go up entry */}
+                {currentPath !== "/" && (
+                  <tr
+                    onClick={() => goUp()}
+                    className="cursor-pointer hover:bg-[var(--bg-tertiary)] transition-colors"
+                  >
+                    <td className="px-4 py-1.5 text-[var(--text-primary)]">..</td>
+                    <td></td>
+                    <td></td>
+                    <td></td>
+                  </tr>
+                )}
+                {entries.map((entry) => (
+                  <tr
+                    key={entry.name}
+                    onClick={() => entry.is_directory && navigate(entry.path)}
+                    className={`${
+                      entry.is_directory ? "cursor-pointer" : ""
+                    } hover:bg-[var(--bg-tertiary)] transition-colors`}
+                  >
+                    <td className="px-4 py-1.5">
+                      <span className={entry.is_directory ? "text-[var(--accent)]" : "text-[var(--text-primary)]"}>
+                        {entry.is_directory ? "📁 " : ""}{entry.name}
+                      </span>
+                    </td>
+                    <td className="px-2 py-1.5 text-[var(--text-secondary)] text-right whitespace-nowrap">
+                      {!entry.is_directory && formatSize(entry.size)}
+                    </td>
+                    <td className="px-2 py-1.5 text-[var(--text-secondary)] whitespace-nowrap">
+                      {entry.modified}
+                    </td>
+                    <td className="px-2 py-1.5 text-right">
+                      {!entry.is_directory && (
+                        <button
+                          onClick={(e) => {
+                            e.stopPropagation();
+                            downloadFile(entry);
+                          }}
+                          className="text-[var(--accent)] hover:text-[var(--accent-hover)] transition-colors px-1"
+                          title="Download"
+                        >
+                          ↓
+                        </button>
+                      )}
+                    </td>
+                  </tr>
+                ))}
+                {entries.length === 0 && !loading && (
+                  <tr>
+                    <td colSpan={4} className="px-4 py-8 text-center text-[var(--text-secondary)]">
+                      Empty directory
+                    </td>
+                  </tr>
+                )}
+              </tbody>
+            </table>
+          )}
+        </div>
+
+        {/* Footer */}
+        <div className="flex items-center justify-between px-4 py-3 border-t border-[var(--border-color)]">
+          <button
+            onClick={uploadFile}
+            className="text-xs text-[var(--accent)] hover:text-[var(--accent-hover)] transition-colors"
+          >
+            Upload file
+          </button>
+          <button
+            onClick={onClose}
+            className="px-4 py-1.5 text-xs text-[var(--text-secondary)] hover:text-[var(--text-primary)] transition-colors"
+          >
+            Close
+          </button>
+        </div>
+      </div>
+    </div>
+  );
+}

app/src/components/projects/ProjectCard.tsx

@@ -10,6 +10,8 @@ import EnvVarsModal from "./EnvVarsModal";
 import PortMappingsModal from "./PortMappingsModal";
 import ClaudeInstructionsModal from "./ClaudeInstructionsModal";
 import ContainerProgressModal from "./ContainerProgressModal";
+import FileManagerModal from "./FileManagerModal";
+import ConfirmRemoveModal from "./ConfirmRemoveModal";
 
 interface Props {
   project: Project;
@@ -27,9 +29,13 @@ export default function ProjectCard({ project }: Props) {
   const [showEnvVarsModal, setShowEnvVarsModal] = useState(false);
   const [showPortMappingsModal, setShowPortMappingsModal] = useState(false);
   const [showClaudeInstructionsModal, setShowClaudeInstructionsModal] = useState(false);
+  const [showFileManager, setShowFileManager] = useState(false);
   const [progressMsg, setProgressMsg] = useState<string | null>(null);
   const [activeOperation, setActiveOperation] = useState<"starting" | "stopping" | "resetting" | null>(null);
   const [operationCompleted, setOperationCompleted] = useState(false);
+  const [showRemoveModal, setShowRemoveModal] = useState(false);
+  const [isEditingName, setIsEditingName] = useState(false);
+  const [editName, setEditName] = useState(project.name);
   const isSelected = selectedProjectId === project.id;
   const isStopped = project.status === "stopped" || project.status === "error";
 
@@ -54,6 +60,7 @@ export default function ProjectCard({ project }: Props) {
 
   // Sync local state when project prop changes (e.g., after save or external update)
   useEffect(() => {
+    setEditName(project.name);
     setPaths(project.paths ?? []);
     setSshKeyPath(project.ssh_key_path ?? "");
     setGitName(project.git_user_name ?? "");
@@ -135,6 +142,14 @@ export default function ProjectCard({ project }: Props) {
     }
   };
 
+  const handleOpenBashShell = async () => {
+    try {
+      await openTerminal(project.id, project.name, "bash");
+    } catch (e) {
+      setError(String(e));
+    }
+  };
+
   const handleForceStop = async () => {
     try {
       await stop(project.id);
@@ -309,7 +324,41 @@ export default function ProjectCard({ project }: Props) {
     >
       <div className="flex items-center gap-2">
         <span className={`w-2 h-2 rounded-full flex-shrink-0 ${statusColor}`} />
-        <span className="text-sm font-medium truncate flex-1">{project.name}</span>
+        {isEditingName ? (
+          <input
+            autoFocus
+            value={editName}
+            onChange={(e) => setEditName(e.target.value)}
+            onBlur={async () => {
+              setIsEditingName(false);
+              const trimmed = editName.trim();
+              if (trimmed && trimmed !== project.name) {
+                try {
+                  await update({ ...project, name: trimmed });
+                } catch (err) {
+                  console.error("Failed to rename project:", err);
+                  setEditName(project.name);
+                }
+              } else {
+                setEditName(project.name);
+              }
+            }}
+            onKeyDown={(e) => {
+              if (e.key === "Enter") (e.target as HTMLInputElement).blur();
+              if (e.key === "Escape") { setEditName(project.name); setIsEditingName(false); }
+            }}
+            onClick={(e) => e.stopPropagation()}
+            className="text-sm font-medium flex-1 min-w-0 px-1 py-0 bg-[var(--bg-primary)] border border-[var(--accent)] rounded text-[var(--text-primary)] focus:outline-none"
+          />
+        ) : (
+          <span
+            className="text-sm font-medium truncate flex-1 cursor-text"
+            title="Double-click to rename"
+            onDoubleClick={(e) => { e.stopPropagation(); setIsEditingName(true); }}
+          >
+            {project.name}
+          </span>
+        )}
       </div>
       <div className="mt-0.5 ml-4 space-y-0.5">
         {project.paths.map((pp, i) => (
@@ -371,6 +420,8 @@ export default function ProjectCard({ project }: Props) {
               <>
                 <ActionButton onClick={handleStop} disabled={loading} label="Stop" />
                 <ActionButton onClick={handleOpenTerminal} disabled={loading} label="Terminal" accent />
+                <ActionButton onClick={handleOpenBashShell} disabled={loading} label="Shell" />
+                <ActionButton onClick={() => setShowFileManager(true)} disabled={loading} label="Files" />
               </>
             ) : (
               <>
@@ -386,11 +437,7 @@ export default function ProjectCard({ project }: Props) {
               label={showConfig ? "Hide" : "Config"}
             />
             <ActionButton
-              onClick={async () => {
+              onClick={() => setShowRemoveModal(true)}
-                if (confirm(`Remove project "${project.name}"?`)) {
-                  await remove(project.id);
-                }
-              }}
               disabled={loading}
               label="Remove"
               danger
@@ -576,6 +623,28 @@ export default function ProjectCard({ project }: Props) {
                 </button>
               </div>
 
+              {/* Mission Control toggle */}
+              <div className="flex items-center gap-2">
+                <label className="text-xs text-[var(--text-secondary)]">Mission Control</label>
+                <button
+                  onClick={async () => {
+                    try {
+                      await update({ ...project, mission_control_enabled: !project.mission_control_enabled });
+                    } catch (err) {
+                      console.error("Failed to update Mission Control setting:", err);
+                    }
+                  }}
+                  disabled={!isStopped}
+                  className={`px-2 py-0.5 text-xs rounded transition-colors disabled:opacity-50 ${
+                    project.mission_control_enabled
+                      ? "bg-[var(--success)] text-white"
+                      : "bg-[var(--bg-primary)] border border-[var(--border-color)] text-[var(--text-secondary)]"
+                  }`}
+                >
+                  {project.mission_control_enabled ? "ON" : "OFF"}
+                </button>
+              </div>
+
               {/* Environment Variables */}
               <div className="flex items-center justify-between">
                 <label className="text-xs text-[var(--text-secondary)]">
@@ -827,6 +896,25 @@ export default function ProjectCard({ project }: Props) {
         />
       )}
 
+      {showFileManager && (
+        <FileManagerModal
+          projectId={project.id}
+          projectName={project.name}
+          onClose={() => setShowFileManager(false)}
+        />
+      )}
+
+      {showRemoveModal && (
+        <ConfirmRemoveModal
+          projectName={project.name}
+          onConfirm={async () => {
+            setShowRemoveModal(false);
+            await remove(project.id);
+          }}
+          onCancel={() => setShowRemoveModal(false)}
+        />
+      )}
+
       {activeOperation && (
         <ContainerProgressModal
           projectName={project.name}
@@ -869,3 +957,4 @@ function ActionButton({
     </button>
   );
 }
+

app/src/components/settings/SettingsPanel.tsx

@@ -2,7 +2,6 @@ import { useState, useEffect } from "react";
 import ApiKeyInput from "./ApiKeyInput";
 import DockerSettings from "./DockerSettings";
 import AwsSettings from "./AwsSettings";
-import MicrophoneSettings from "./MicrophoneSettings";
 import { useSettings } from "../../hooks/useSettings";
 import { useUpdates } from "../../hooks/useUpdates";
 import ClaudeInstructionsModal from "../projects/ClaudeInstructionsModal";
@@ -60,8 +59,6 @@ export default function SettingsPanel() {
       <DockerSettings />
       <AwsSettings />
 
-      <MicrophoneSettings />
-
       {/* Container Timezone */}
       <div>
         <label className="block text-sm font-medium mb-1">Container Timezone</label>

app/src/components/terminal/TerminalTabs.tsx

@@ -23,7 +23,9 @@ export default function TerminalTabs() {
               : "text-[var(--text-secondary)] hover:text-[var(--text-primary)]"
           }`}
         >
-          <span className="truncate max-w-[120px]">{session.projectName}</span>
+          <span className="truncate max-w-[120px]">
+            {session.projectName}{session.sessionType === "bash" ? " (bash)" : ""}
+          </span>
           <button
             onClick={(e) => {
               e.stopPropagation();

app/src/components/terminal/TerminalView.tsx

@@ -6,8 +6,6 @@ import { WebLinksAddon } from "@xterm/addon-web-links";
 import { openUrl } from "@tauri-apps/plugin-opener";
 import "@xterm/xterm/css/xterm.css";
 import { useTerminal } from "../../hooks/useTerminal";
-import { useSettings } from "../../hooks/useSettings";
-import { useVoice } from "../../hooks/useVoice";
 import { UrlDetector } from "../../lib/urlDetector";
 import UrlToast from "./UrlToast";
 
@@ -24,9 +22,6 @@ export default function TerminalView({ sessionId, active }: Props) {
   const webglRef = useRef<WebglAddon | null>(null);
   const detectorRef = useRef<UrlDetector | null>(null);
   const { sendInput, pasteImage, resize, onOutput, onExit } = useTerminal();
-  const { appSettings } = useSettings();
-
-  const voice = useVoice(sessionId, appSettings?.default_microphone);
 
   const [detectedUrl, setDetectedUrl] = useState<string | null>(null);
   const [imagePasteMsg, setImagePasteMsg] = useState<string | null>(null);
@@ -205,7 +200,6 @@ export default function TerminalView({ sessionId, active }: Props) {
       try { webglRef.current?.dispose(); } catch { /* may already be disposed */ }
       webglRef.current = null;
       term.dispose();
-      voice.stop();
     };
   }, [sessionId]); // eslint-disable-line react-hooks/exhaustive-deps
 
@@ -290,32 +284,6 @@ export default function TerminalView({ sessionId, active }: Props) {
           {imagePasteMsg}
         </div>
       )}
-      <button
-        onClick={voice.toggle}
-        title={
-          voice.state === "active"
-            ? "Voice active — click to stop"
-            : voice.error
-              ? `Voice error: ${voice.error}`
-              : "Enable voice input for /voice mode"
-        }
-        className={`absolute bottom-4 left-4 z-50 px-3 py-1.5 rounded-md text-xs font-medium border shadow-lg transition-colors cursor-pointer ${
-          voice.state === "active"
-            ? "bg-[#1a3a2a] text-[#3fb950] border-[#238636] hover:bg-[#243b2a]"
-            : voice.state === "starting"
-              ? "bg-[#1f2937] text-[#d29922] border-[#30363d] opacity-75"
-              : voice.state === "error"
-                ? "bg-[#3a1a1a] text-[#ff7b72] border-[#da3633] hover:bg-[#4a2020]"
-                : "bg-[#1f2937] text-[#b1bac4] border-[#30363d] hover:bg-[#2d3748] hover:text-[#e6edf3]"
-        }`}
-        disabled={voice.state === "starting"}
-      >
-        {voice.state === "active"
-          ? "Mic On"
-          : voice.state === "starting"
-            ? "Mic..."
-            : "Mic Off"}
-      </button>
       {!isAtBottom && (
         <button
           onClick={handleScrollToBottom}

app/src/hooks/useFileManager.ts

@@ -0,0 +1,74 @@
+import { useState, useCallback } from "react";
+import { save, open as openDialog } from "@tauri-apps/plugin-dialog";
+import type { FileEntry } from "../lib/types";
+import * as commands from "../lib/tauri-commands";
+
+export function useFileManager(projectId: string) {
+  const [currentPath, setCurrentPath] = useState("/workspace");
+  const [entries, setEntries] = useState<FileEntry[]>([]);
+  const [loading, setLoading] = useState(false);
+  const [error, setError] = useState<string | null>(null);
+
+  const navigate = useCallback(
+    async (path: string) => {
+      setLoading(true);
+      setError(null);
+      try {
+        const result = await commands.listContainerFiles(projectId, path);
+        setEntries(result);
+        setCurrentPath(path);
+      } catch (e) {
+        setError(String(e));
+      } finally {
+        setLoading(false);
+      }
+    },
+    [projectId],
+  );
+
+  const goUp = useCallback(() => {
+    if (currentPath === "/") return;
+    const parent = currentPath.replace(/\/[^/]+$/, "") || "/";
+    navigate(parent);
+  }, [currentPath, navigate]);
+
+  const refresh = useCallback(() => {
+    navigate(currentPath);
+  }, [currentPath, navigate]);
+
+  const downloadFile = useCallback(
+    async (entry: FileEntry) => {
+      try {
+        const hostPath = await save({ defaultPath: entry.name });
+        if (!hostPath) return;
+        await commands.downloadContainerFile(projectId, entry.path, hostPath);
+      } catch (e) {
+        setError(String(e));
+      }
+    },
+    [projectId],
+  );
+
+  const uploadFile = useCallback(async () => {
+    try {
+      const selected = await openDialog({ multiple: false, directory: false });
+      if (!selected) return;
+      await commands.uploadFileToContainer(projectId, selected as string, currentPath);
+      await navigate(currentPath);
+    } catch (e) {
+      setError(String(e));
+    }
+  }, [projectId, currentPath, navigate]);
+
+  return {
+    currentPath,
+    entries,
+    loading,
+    error,
+    navigate,
+    goUp,
+    refresh,
+    downloadFile,
+    uploadFile,
+  };
+}

app/src/hooks/useTerminal.ts

@@ -17,10 +17,10 @@ export function useTerminal() {
     );
 
   const open = useCallback(
-    async (projectId: string, projectName: string) => {
+    async (projectId: string, projectName: string, sessionType: "claude" | "bash" = "claude") => {
       const sessionId = crypto.randomUUID();
-      await commands.openTerminalSession(projectId, sessionId);
+      await commands.openTerminalSession(projectId, sessionId, sessionType);
-      addSession({ id: sessionId, projectId, projectName });
+      addSession({ id: sessionId, projectId, projectName, sessionType });
       return sessionId;
     },
     [addSession],

app/src/lib/tauri-commands.ts

@@ -1,5 +1,5 @@
 import { invoke } from "@tauri-apps/api/core";
-import type { Project, ProjectPath, ContainerInfo, SiblingContainer, AppSettings, UpdateInfo, McpServer } from "./types";
+import type { Project, ProjectPath, ContainerInfo, SiblingContainer, AppSettings, UpdateInfo, McpServer, FileEntry } from "./types";
 
 // Docker
 export const checkDocker = () => invoke<boolean>("check_docker");
@@ -24,6 +24,8 @@ export const stopProjectContainer = (projectId: string) =>
   invoke<void>("stop_project_container", { projectId });
 export const rebuildProjectContainer = (projectId: string) =>
   invoke<Project>("rebuild_project_container", { projectId });
+export const reconcileProjectStatuses = () =>
+  invoke<Project[]>("reconcile_project_statuses");
 
 // Settings
 export const getSettings = () => invoke<AppSettings>("get_settings");
@@ -39,8 +41,8 @@ export const detectHostTimezone = () =>
   invoke<string>("detect_host_timezone");
 
 // Terminal
-export const openTerminalSession = (projectId: string, sessionId: string) =>
+export const openTerminalSession = (projectId: string, sessionId: string, sessionType?: string) =>
-  invoke<void>("open_terminal_session", { projectId, sessionId });
+  invoke<void>("open_terminal_session", { projectId, sessionId, sessionType });
 export const terminalInput = (sessionId: string, data: number[]) =>
   invoke<void>("terminal_input", { sessionId, data });
 export const terminalResize = (sessionId: string, cols: number, rows: number) =>
@@ -65,6 +67,14 @@ export const updateMcpServer = (server: McpServer) =>
 export const removeMcpServer = (serverId: string) =>
   invoke<void>("remove_mcp_server", { serverId });
 
+// Files
+export const listContainerFiles = (projectId: string, path: string) =>
+  invoke<FileEntry[]>("list_container_files", { projectId, path });
+export const downloadContainerFile = (projectId: string, containerPath: string, hostPath: string) =>
+  invoke<void>("download_container_file", { projectId, containerPath, hostPath });
+export const uploadFileToContainer = (projectId: string, hostPath: string, containerDir: string) =>
+  invoke<void>("upload_file_to_container", { projectId, hostPath, containerDir });
+
 // Updates
 export const getAppVersion = () => invoke<string>("get_app_version");
 export const checkForUpdates = () =>

app/src/lib/types.ts

@@ -23,6 +23,7 @@ export interface Project {
   auth_mode: AuthMode;
   bedrock_config: BedrockConfig | null;
   allow_docker_access: boolean;
+  mission_control_enabled: boolean;
   ssh_key_path: string | null;
   git_token: string | null;
   git_user_name: string | null;
@@ -77,6 +78,7 @@ export interface TerminalSession {
   id: string;
   projectId: string;
   projectName: string;
+  sessionType: "claude" | "bash";
 }
 
 export type ImageSource = "registry" | "local_build" | "custom";
@@ -134,3 +136,12 @@ export interface McpServer {
   created_at: string;
   updated_at: string;
 }
+
+export interface FileEntry {
+  name: string;
+  path: string;
+  is_directory: boolean;
+  size: number;
+  modified: string;
+  permissions: string;
+}

container/entrypoint.sh

@@ -116,6 +116,33 @@ if [ -n "$CLAUDE_INSTRUCTIONS" ]; then
     unset CLAUDE_INSTRUCTIONS
 fi
 
+# ── Mission Control setup ───────────────────────────────────────────────────
+if [ "$MISSION_CONTROL_ENABLED" = "1" ]; then
+    MC_HOME="/home/claude/mission-control"
+    MC_LINK="/workspace/mission-control"
+    if [ ! -d "$MC_HOME/.git" ]; then
+        echo "entrypoint: cloning mission-control..."
+        su -s /bin/bash claude -c \
+            'git clone https://github.com/msieurthenardier/mission-control.git /home/claude/mission-control' \
+            || echo "entrypoint: warning — failed to clone mission-control"
+    else
+        echo "entrypoint: mission-control already present, skipping clone"
+    fi
+    # Symlink into workspace so Claude sees it at /workspace/mission-control
+    ln -sfn "$MC_HOME" "$MC_LINK"
+    chown -h claude:claude "$MC_LINK"
+
+    # Install skills to ~/.claude/skills/ so Claude Code discovers them automatically
+    if [ -d "$MC_HOME/.claude/skills" ]; then
+        mkdir -p /home/claude/.claude/skills
+        cp -r "$MC_HOME/.claude/skills/"* /home/claude/.claude/skills/ 2>/dev/null
+        chown -R claude:claude /home/claude/.claude/skills
+        echo "entrypoint: mission-control skills installed to ~/.claude/skills/"
+    fi
+
+    unset MISSION_CONTROL_ENABLED
+fi
+
 # ── MCP server configuration ────────────────────────────────────────────────
 # Merge MCP server config into ~/.claude.json (preserves existing keys like
 # OAuth tokens). Creates the file if it doesn't exist.